Is it recommended to have a "cross-plattform" Windows- and WebGL build of the same application?

Dufffit

See title. Will I run into problems when I want my app to run on Windows and as WebGL at the same time? I want to create rooms in the Windows-Version and join them from the WebGL version.
Usually Windows builds use a different protocol than WebGL, right?

Tobias

With Photon, the actual protocol does not play as much of a role. The server understands both clients and they should be able to talk to one another (thanks to Unity's "magic" platform builds).

Give it a try.